PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g001550.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 692aa    MW: 76646 Da    PI: 8.6425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g001550.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.2e-07594642247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sopen06g001550.2 594 RPFSVFEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 642
                       56777799*****************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.06E-10393485IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.903.9E-4397469No hitNo description
PROSITE profilePS500539.635399469IPR000626Ubiquitin domain
PROSITE profilePS5129413.527588647IPR017930Myb domain
SMARTSM007173.5E-6592645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-10593643IPR009057Homeodomain-like
SuperFamilySSF466893.79E-15594675IPR009057Homeodomain-like
CDDcd116609.14E-17594644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MELHKRLDYG FIGYQVPHIP RATRSARGRG NIRKKSDSNE MCAFDLLTTV AGKLLLEGES  60
TSNSSGKDQS AVVKDTIETV KEDEDTPLKE NPCNERCQER GFFISQIVSE APVINHCLSK  120
STDTLSGPAS VITSSNCSEK LGSAEQFING ERKTENRNCS TKVEHELSGC RDFSSCTLGA  180
ESKKQVKLDL SNDATITTNK RAAVCSSEFP DPWDRKRSML VASDNTVKLS LSTDPDPFGS  240
FPVIRNDVQL ANKDDDEKSC GCTQPSTRNK AFRPAPRVGD WRMRKLQASK YWEVNPQSDD  300
EGHVNVDNET RHVYQKRENV YMNERSQRDF PFKKRKLYYC NSFSNSDGGS SDGICSSPTK  360
DLNRDASGYS LASSGARAAS GTSIPKGASA SFRSNDSHVK LKIKSFRVPE LFVEIPENAT  420
VGSLKRTVME AVTAILGGGL RIGVVFQGKK VRDDSKTLSQ AGISHDDKLD GLGFTLEPSP  480
SRASPPLGPE GCSRVLPCET PQPLTRCSPG STIIHNGMQR ETYNAFPDHS GTTLSNFIES  540
DHDSAPSPPD ASLEKNAADS RALVPVAAMD AEALAVVPMR KPKRCETVQR RIRRPFSVFE  600
VEALVQAVEK LGTGRWRDVK MRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ  660
ELLDRVLIAH AYWSQQQARQ QMKHQSETRL LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-545806834107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326335QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773687.10.0telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E31e-137TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLM0ZPY10.0M0ZPY1_SOLTU; Uncharacterized protein
STRINGSolyc06g005590.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-134TRF-like 2