PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g002330.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 238aa MW: 26094.9 Da PI: 8.4769

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g002330.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.2	1e-41	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkCa++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++l+qq+++l++e Sopen06g002330.1 52 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLNQQVQSLQVE 144 7****************************************************************************************** PP DUF260 94 lallkee 100 l+ +++e Sopen06g002330.1 145 LNITRAE 151 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.501	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-41	52	149	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSTTRERLDE IIGKKLKIEN IDASSKLHMQ QIMGRRHIIL EPSCTKLNTI IPCAACKLLR 60 RKCAEECPFS PYFSPHEPQK FAAVHKVFGA SNVSKLLMEV PESQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISTLNQQVQS LQVELNITRA EILRYKYREA MNNLIIASTG IGATVAAAEL 180 PQAPSTPTHP PRPPPPQESF GVVVPSCSSP PSTQSVYATP SNGANFSVIS NNNVPYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	52	159	11	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	52	159	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078871.1	1e-177	LOB domain-containing protein 15-like
Swissprot	Q9AT61	1e-69	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3Q7GRX2	1e-156	A0A3Q7GRX2_SOLLC; Uncharacterized protein
STRING	Solyc06g007390.2.1	1e-157	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-72	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]