PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g003060.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 462aa    MW: 50245.7 Da    PI: 4.7438
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g003060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.24.5e-34249303155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  Sopen06g003060.1 249 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 303
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.436246306IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-31247305IPR009057Homeodomain-like
SuperFamilySSF466895.55E-18247303IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-25249303IPR006447Myb domain, plants
PfamPF002492.8E-10251302IPR001005SANT/Myb domain
PfamPF143794.0E-24334381IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEARPALSVQ RTGAHELSNF GASGAHSSLP VLQTSLEEKY PKLPGAALSS FPSNSGAVSH  60
LFSSPSEFST NLDFSSVLPY DEHLAPATFI SQPTINEASI PLANSGVLQG AASSQYVNVN  120
SESWCTELLP DYLDYSVNAP VQNTQLDCRN SGDCQIPPED PSKQSDWPEW ADLVMSDDDA  180
LTSSWMVDTS IADAEPKEQN QPSNFPVHQV QPFQQIPTAS VETSAVIPAS VETSAVVPAS  240
STGSGSSSKQ RMRWTPELHE AFVEAVNKLG GSERATPKGV LKLMKVEGLT IYHVKSHLQK  300
YRTARYKPEA SEGSSEKKES SIGDLSALDL KTGIEITEAL RLQMEVQKQL HEQLEIQRNL  360
QLRIEEQGRC LQMMFEKQCK SMPGIDLAKG SSSMAEAASA QLNDAVQSSS NKNDPGASLV  420
DHHEAGSHTT QEVVREKQKE HEREDITSSS NLPPTKRAKV DE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-32249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-32249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-32249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-32249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-32249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-32249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-32249307260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-32249307260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078237.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2
TrEMBLA0A3Q7GPJ70.0A0A3Q7GPJ7_SOLLC; Uncharacterized protein
STRINGSolyc06g008200.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-79phosphate starvation response 1