PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g004240.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 849aa MW: 96160.7 Da PI: 5.573

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g004240.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	302.5	1e-92	479	847	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilk 92 lv+lLl++Ae v++++++la++ +a+ as +g+p+qRl +yf eAL++r+ r + + + + + s+ ++ +l + + P+ + Sopen06g004240.1 479 LVHLLLAAAEEVDQQQFHLASQSIAQCLWKASATGNPIQRLCFYFGEALQERIDReIGRSPCFERKLRFLSTLALGNTPESL-TCHTEIPFSQ 570 68***************************************************322221111222222222233333333.355667 PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 + +++ NqaI+e v+g++++H +Df+i G+QW L+qaL++R++ p l+iT++g+ ++ke++eetg+rL++fA++l++pf+f+++ ++ Sopen06g004240.1 571 VMQFAGNQAIVEYVKGATKIHLVDFNIRSGIQWTGLMQALSERRNCPIeLLKITAIGH---QEKEKIEETGKRLQSFANSLNLPFSFDMIFMS 660 *************************************9996665499***...579************************* PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++dl+ e+ ++k +E++aV + l ++ + +++ d++++++++l+P vvvv+e ea++ns+sFl+rf+eal +ys+lfd++e + r Sopen06g004240.1 661 DMKDLKAESVNLKADETVAVYCYTVLRTMI----CRQDYLDNTMRVIRGLRPSVVVVCEVEANLNSPSFLNRFVEALFFYSVLFDCFEDCMDR 749 ********************999998....77778888*********************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369 ++ r+ +E + +g+ i n+va+egaer+ r+ +l Wr+ + ++G+ +++lse+ qa+l+l++++ + v+++ ++l+ gWk+ p+ s Sopen06g004240.1 750 DNLVRKRIEVFHIGEGIWNMVAAEGAERFTRNVKLDVWRAYFARFGMVEMELSESSRYQANLILKQFShGSSCIVQKDGKALLVGWKGTPIES 842 ****************************************************************777788999999999****** PP GRAS 370 vSaWr 374 vS W+ Sopen06g004240.1 843 VSIWK 847 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.259	453	826	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-90	479	847	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
MGSSSKFYVS VSKGYVVNML RESFQCLTII LLSLLLPLSF IVLARLSVTR YLIATSDYTE 60 PNTLLVKLFL YANPVFLRLL TPLVTISALT QCLTGRTLTD HIMISKSHLY MSWLILFTFQ 120 ICVSIGIEGS IAVGIDGSTS FSHQRLYLLT RSLFFMGLHE TTLFWSKKVV KPVVDDTIFG 180 VEKEDRYVEK VAMAMSFGIL WWCKLGDEVE SLVVVAEVKR DLFGSVGLVD FVGWWLYYVT 240 VAIGMVKVVK GLIWLNFVLF CGNMVVGSDN AGCCTRNDEK GGHNHVQECG RNELINNVAV 300 DPWFELDSED LDSLYTVFDL KYQDNTSDKQ VQSLEDQQQS ISDHWTQSDD SSNMDLPLQP 360 IQIKTTPEAS NGIQPQEPRL DNFHGEKTNS ISLASLEILN NCGRLFKKPS EENLSNVLLS 420 NEARVSNISK LSTEEILRVA GERYIQYSTQ RVDGLSMFIH PYASSLSGLS IEQTKDMELV 480 HLLLAAAEEV DQQQFHLASQ SIAQCLWKAS ATGNPIQRLC FYFGEALQER IDREIGRSPC 540 FERKLRFLST LALGNTPESL TCHTEIPFSQ VMQFAGNQAI VEYVKGATKI HLVDFNIRSG 600 IQWTGLMQAL SERRNCPIEL LKITAIGHQE KEKIEETGKR LQSFANSLNL PFSFDMIFMS 660 DMKDLKAESV NLKADETVAV YCYTVLRTMI CRQDYLDNTM RVIRGLRPSV VVVCEVEANL 720 NSPSFLNRFV EALFFYSVLF DCFEDCMDRD NLVRKRIEVF HIGEGIWNMV AAEGAERFTR 780 NVKLDVWRAY FARFGMVEME LSESSRYQAN LILKQFSHGS SCIVQKDGKA LLVGWKGTPI 840 ESVSIWKFL

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

MGSSSKFYVS VSKGYVVNML RESFQCLTII LLSLLLPLSF IVLARLSVTR YLIATSDYTE  60
PNTLLVKLFL YANPVFLRLL TPLVTISALT QCLTGRTLTD HIMISKSHLY MSWLILFTFQ  120
ICVSIGIEGS IAVGIDGSTS FSHQRLYLLT RSLFFMGLHE TTLFWSKKVV KPVVDDTIFG  180
VEKEDRYVEK VAMAMSFGIL WWCKLGDEVE SLVVVAEVKR DLFGSVGLVD FVGWWLYYVT  240
VAIGMVKVVK GLIWLNFVLF CGNMVVGSDN AGCCTRNDEK GGHNHVQECG RNELINNVAV  300
DPWFELDSED LDSLYTVFDL KYQDNTSDKQ VQSLEDQQQS ISDHWTQSDD SSNMDLPLQP  360
IQIKTTPEAS NGIQPQEPRL DNFHGEKTNS ISLASLEILN NCGRLFKKPS EENLSNVLLS  420
NEARVSNISK LSTEEILRVA GERYIQYSTQ RVDGLSMFIH PYASSLSGLS IEQTKDMELV  480
HLLLAAAEEV DQQQFHLASQ SIAQCLWKAS ATGNPIQRLC FYFGEALQER IDREIGRSPC  540
FERKLRFLST LALGNTPESL TCHTEIPFSQ VMQFAGNQAI VEYVKGATKI HLVDFNIRSG  600
IQWTGLMQAL SERRNCPIEL LKITAIGHQE KEKIEETGKR LQSFANSLNL PFSFDMIFMS  660
DMKDLKAESV NLKADETVAV YCYTVLRTMI CRQDYLDNTM RVIRGLRPSV VVVCEVEANL  720
NSPSFLNRFV EALFFYSVLF DCFEDCMDRD NLVRKRIEVF HIGEGIWNMV AAEGAERFTR  780
NVKLDVWRAY FARFGMVEME LSESSRYQAN LILKQFSHGS SCIVQKDGKA LLVGWKGTPI  840
ESVSIWKFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-47	497	847	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078169.1	0.0	DELLA protein RGL1-like
TrEMBL	K4C3Z1	0.0	K4C3Z1_SOLLC; Uncharacterized protein
STRING	Solyc06g009610.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4694	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-49	RGA-like 1