PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g010700.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 314aa    MW: 34494.1 Da    PI: 10.7461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g010700.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.1e-11105149347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++ + + lG+g+W+ I+++    Rt+ q+ s+ qky
  Sopen06g010700.2 105 SWTEEEHRYFLIGLENLGKGDWRGISKRYVPSRTPTQVASHAQKY 149
                       7*************************99999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.3E-4627IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.565924IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.4798154IPR017930Myb domain
SuperFamilySSF466894.64E-1799154IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-15101152IPR006447Myb domain, plants
SMARTSM007172.8E-8102152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-10102148IPR009057Homeodomain-like
CDDcd001673.42E-8105150No hitNo description
PfamPF002494.6E-9105149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MVSMAKDARK CSHCGHNGHN SRTCNSKGIK LFGVRIDDSN TTNQHRFVDT KMKMGEYESI  60
RRSKSLGNLE HAAAATNYDH NGGVEAGYLS DGPILSIRHR KKGTSWTEEE HRYFLIGLEN  120
LGKGDWRGIS KRYVPSRTPT QVASHAQKYF IRIASIEKKK RRPSVFDVHL KNPNSHISSK  180
SSSYIPEVSK EASKGVPSAT RERPPLSPSP ISRPFGVPNL AHMPYVVGVP RNIQGVSSSK  240
VGPTISWIPI VNFHNQSRVH LKNYSQGPPP FAPFVAPPTI GVLPSRPPSQ VQSQAGHSTP  300
ITNKDGVNIS IGAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KKKRR
2157162KKKRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-171HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773873.10.0probable transcription factor At5g61620 isoform X3
TrEMBLM1BY820.0M1BY82_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000556160.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-49MYB_related family protein