PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g010700.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 319aa    MW: 34979.7 Da    PI: 10.7461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g010700.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.2e-11105149347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++ + + lG+g+W+ I+++    Rt+ q+ s+ qky
  Sopen06g010700.3 105 SWTEEEHRYFLIGLENLGKGDWRGISKRYVPSRTPTQVASHAQKY 149
                       7*************************99999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.4E-4627IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.565924IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.4798154IPR017930Myb domain
SuperFamilySSF466894.79E-1799154IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-15101152IPR006447Myb domain, plants
SMARTSM007172.8E-8102152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-10102148IPR009057Homeodomain-like
PfamPF002494.7E-9105149IPR001005SANT/Myb domain
CDDcd001673.54E-8105150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVSMAKDARK CSHCGHNGHN SRTCNSKGIK LFGVRIDDSN TTNQHRFVDT KMKMGEYESI  60
RRSKSLGNLE HAAAATNYDH NGGVEAGYLS DGPILSIRHR KKGTSWTEEE HRYFLIGLEN  120
LGKGDWRGIS KRYVPSRTPT QVASHAQKYF IRIASIEKKK RRPSVFDVHL KNPNSHISSK  180
SSSYIPEVSK ETSSPLASKG VPSATRERPP LSPSPISRPF GVPNLAHMPY VVGVPRNIQG  240
VSSSKVGPTI SWIPIVNFHN QSRVHLKNYS QGPPPFAPFV APPTIGVLPS RPPSQVQSQA  300
GHSTPITNKD GVNISIGAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KKKRR
2157162KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-171HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078973.20.0probable transcription factor At5g61620 isoform X1
SwissprotQ7XC571e-48MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A3Q7GTK60.0A0A3Q7GTK6_SOLLC; Uncharacterized protein
STRINGSolyc06g034030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-49MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]