PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g011720.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 670aa    MW: 74766.4 Da    PI: 5.4491
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g011720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.9e-182575353
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
                      +R++f+ +q++eLe++F+ +++p++++++eLA+k +++++qV++WFqN+R 
  Sopen06g011720.1 25 RRHKFSVNQIHELESVFKVSSHPDEKTKQELATKFSVDKKQVQFWFQNKRS 75
                      89************************************************7 PP
2START162.14e-512034252205
                       HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                       la++a++el+k+a ++ep+Wv+      e +n +e+ ++f +  +     +++ea r s+ v +++ +lve l++ + qW e ++    k+ t
  Sopen06g011720.1 203 LALDALNELLKLAMSDEPLWVRNLdgggETLNMEEYATTFIPIIGikpshFTTEATRSSATVVGNSLTLVEMLMNES-QWVEAFPciigKVNT 294
                       7899************************99**********88766999999**************************.*************** PP

                       EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
             START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                        +vis+g      g+l l+ aelq +s +vp R+  f+R+++++ +++w+ivdvSvd  ++ +++ ++ ++++lpSg++i+++sng+skvtw+
  Sopen06g011720.1 295 FDVISTGigegksGTLLLIEAELQIISNVVPvREIQFLRFCQKHAEDSWIIVDVSVDTIKEGSQQYKIEKCRRLPSGCIIQDMSNGYSKVTWI 387
                       ***************************************************************9***************************** PP

                       E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
             START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                       eh+++++  ++ l+r+l++ gl +ga++w++ lqrq e
  Sopen06g011720.1 388 EHMEYDEIFVDHLYRPLIRAGLGFGAQRWMSSLQRQSE 425
                       ***********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-151574IPR009057Homeodomain-like
SuperFamilySSF466898.17E-151680IPR009057Homeodomain-like
PROSITE profilePS5007115.6132080IPR001356Homeobox domain
SMARTSM003896.6E-132284IPR001356Homeobox domain
PfamPF000463.7E-152575IPR001356Homeobox domain
CDDcd000862.54E-142581No hitNo description
PROSITE profilePS5084839.354193429IPR002913START domain
SuperFamilySSF559616.32E-26195425No hitNo description
SMARTSM002346.4E-34202426IPR002913START domain
PfamPF018523.7E-44203424IPR002913START domain
CDDcd088751.37E-96210425No hitNo description
SuperFamilySSF559611.04E-5451638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MELTNNRDGG VSGDALTSPD GSSERRHKFS VNQIHELESV FKVSSHPDEK TKQELATKFS  60
VDKKQVQFWF QNKRSISKTQ SERYNKRVLQ QENEKLRIEY AAMREVMKNS ICDPCRNKDT  120
TRNENVDEKE ILNEHARLKN ELAKIAIHAD KSLGSSSFLE GSLTSMMENF GLELNEVDFG  180
KYLSSPLPTN LDVTLDKSML LNLALDALNE LLKLAMSDEP LWVRNLDGGG ETLNMEEYAT  240
TFIPIIGIKP SHFTTEATRS SATVVGNSLT LVEMLMNESQ WVEAFPCIIG KVNTFDVIST  300
GIGEGKSGTL LLIEAELQII SNVVPVREIQ FLRFCQKHAE DSWIIVDVSV DTIKEGSQQY  360
KIEKCRRLPS GCIIQDMSNG YSKVTWIEHM EYDEIFVDHL YRPLIRAGLG FGAQRWMSSL  420
QRQSEFLRVM ASFVNSTVDS KGEIGMGTLS QRMTRSFCAV ICATSHKWIT IQKENGKDAN  480
LMMRRNISDA GEPIGVILSA TKTIQLPIKS QCLFQFFTNT NLRRQWDILS CSGAMENIIH  540
ITKGENLESS VSLLCANGGA NENNMMIFQD TCTDATGSLL VYAIVDSSKM NTVMKGGDPS  600
CVELLPNGIS ILPDLSANNN KEFGSGSLVT IMFQMLVDNI STADLPQKSI VDANDIISHT  660
IHKIKTALLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078778.10.0homeobox-leucine zipper protein HDG1-like isoform X1
TrEMBLA0A3Q7HLS60.0A0A3Q7HLS6_SOLLC; Uncharacterized protein
STRINGSolyc06g035940.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2092233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-178HD-ZIP family protein