PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g012070.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 299aa MW: 33049.7 Da PI: 10.2927

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g012070.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.3e-12	48	92	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Sopen06g012070.1 48 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 92 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.84E-16	42	98	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.18	43	97	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-6	46	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-18	46	95	IPR006447	Myb domain, plants
SMART	SM00717	6.5E-10	47	95	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-10	48	92	IPR001005	SANT/Myb domain
CDD	cd00167	1.06E-7	50	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MALPNLGSFS NPTATASAAA TPSASNPLSP SDDPSKKIRK PYTITKSRES WTEPEHDKFL 60 EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKSG TNEHLPPPRP KRKAAHPYPQ 120 KATKSAAPAV SPVPTSFQAS LPLPEPGIVK RPDSSLLPSN PATVVSVPSW TDNSAPPVSL 180 SQMKKDNVRE TGQPVTNNRC CSSNGSTPRS KSTVKVMERT QVPSLRVLPD FAQVYNFIGS 240 VFDPAVTGHL QKLKKMDRID VETVLLLMRN LSINLTSPDF EHHRQLLSSY DIEMEKQCK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00625	PBM	Transfer from PK02532.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254360	1e-103	AC254360.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-20n17 map 6, complete sequence.
GenBank	AC254409	1e-103	AC254409.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-45k12 map 6, complete sequence.
GenBank	AC254421	1e-103	AC254421.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-44l22 map 6, complete sequence.
GenBank	AC254464	1e-103	AC254464.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-62j20 map 6, complete sequence.
GenBank	AC254493	1e-103	AC254493.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-15i11 map 6, complete sequence.
GenBank	AC254498	1e-103	AC254498.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone sle-6i6 map 6, complete sequence.
GenBank	HG975445	1e-103	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	1e-103	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015079505.1	0.0	protein REVEILLE 6 isoform X1
Swissprot	Q8H0W3	1e-108	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A3Q7GUK4	0.0	A0A3Q7GUK4_SOLLC; Uncharacterized protein
STRING	Solyc06g036300.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	6e-95	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]