PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g014150.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 247aa    MW: 28608.3 Da    PI: 7.5566
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g014150.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-141966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W+++Ed++l+d+++++   +W+  ++  g+ Rt+k+c++rw +yl
  Sopen06g014150.1 19 KGAWSPQEDKKLIDYIAKYRIWNWSQMPKFAGLSRTGKSCRLRWINYL 66
                      79*****************999************************97 PP
2Myb_DNA-binding48.12.7e-1572117148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ eE + +++  + lG++ W++Ia++++ gRt++++k++++++l
  Sopen06g014150.1  72 RGPFSLEETQTIIKMYQSLGNR-WSAIAKELP-GRTDNEIKNFYHTHL 117
                       89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.651466IPR017930Myb domain
SuperFamilySSF466894.18E-2817113IPR009057Homeodomain-like
SMARTSM007171.6E-111868IPR001005SANT/Myb domain
PfamPF002496.2E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-222073IPR009057Homeodomain-like
CDDcd001679.09E-92166No hitNo description
PROSITE profilePS5129421.2567121IPR017930Myb domain
SMARTSM007174.2E-1571119IPR001005SANT/Myb domain
PfamPF002498.2E-1472117IPR001005SANT/Myb domain
CDDcd001672.59E-1074117No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2574120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGEVVFQLQH GKNTGYVKKG AWSPQEDKKL IDYIAKYRIW NWSQMPKFAG LSRTGKSCRL  60
RWINYLRPDI KRGPFSLEET QTIIKMYQSL GNRWSAIAKE LPGRTDNEIK NFYHTHLKKH  120
VGTKVEVKPK SRKKAKQIEM STQKKPLITT NCPNIQSFDF TNSSSSSSYI IFDENYDFLE  180
TYNQENDVTS IVNQVDDENI VILESNPESI STSSVDLYIQ DFMDVSIDSS NVDFWLELYM  240
AADNLNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24191237110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078427.10.0transcription factor MYB14-like
TrEMBLK4C4L11e-180K4C4L1_SOLLC; Uncharacterized protein
STRINGSolyc06g033870.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-51myb domain protein 14