PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g014200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11312.7 Da    PI: 4.2704
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g014200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.51.2e-15353151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ie+   rq  +sk +  i KK +EL vLCd+++a++++s++g++  yss
  Sopen06g014200.1  3 KKIEDLVSRQQFYSKCKDSIVKKSNELGVLCDTNIALLMVSPNGEVTSYSS 53
                      6899*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.269155IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-16261IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-9254IPR002100Transcription factor, MADS-box
PfamPF003192.4E-15451IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-71732IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-73253IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MMKKIEDLVS RQQFYSKCKD SIVKKSNELG VLCDTNIALL MVSPNGEVTS YSSGESFEEI  60
MITAMNQPDE LNRRSTPNPD EEMASVNAED MAVAGTSRGW NT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754456e-88HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078431.12e-48agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7GTX26e-40A0A3Q7GTX2_SOLLC; Uncharacterized protein
STRINGSolyc06g033820.1.11e-40(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.15e-14AGAMOUS-like 79