PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g014360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 465aa    MW: 53106.5 Da    PI: 5.7661
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g014360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.76.1e-13958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      k+ie+   rq  +sk +  i KK +EL  LCd+++a++++s++g++  ys
  Sopen06g014360.1  9 KKIEDPVSRQQFYSKCKDSIVKKSNELRLLCDTNIALLMVSPNGEVTSYS 58
                      689*******************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.6161IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-14160IPR002100Transcription factor, MADS-box
CDDcd001208.71E-13258No hitNo description
PRINTSPR004042.7E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-16373IPR002100Transcription factor, MADS-box
PfamPF003195.2E-141057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-103859IPR002100Transcription factor, MADS-box
PfamPF142239.1E-33119258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGSNKIVMKK IEDPVSRQQF YSKCKDSIVK KSNELRLLCD TNIALLMVSP NGEVTSYSGG  60
ERNTLLVMFT NLVMTGENPD LWGVVLDGPT IPMKNGIDGT TKVPKDRKEW NGADKLAIQN  120
NAKAKKILIC GIGPDEYNRI SSCHDAKAIW ETLQTAHEGT TQVKKSKIDN LNRQYELFRM  180
AEGETIQEMH TRFTAIINEI YSLGEIIPNG KAVRKLLSVL PESWESKVEA ITEARDLDKL  240
AMDELIGNLM TYELKKKQEK EIGGKRKEKN LVLTGTTPEN FEDENIALMT KRFSRMLKKG  300
QVYHRRNSQK ITENPIDQVC HKCGSPDHFV KFCPLNALEK KRNSSEKEKE IKNDKYIPTN  360
RRMTNQEADL STRRAFAAMG DLSEEEFEDG GFENQSLLAI EQSNKYDFLA LIAETDSEDD  420
EEDDKQNKVL KIDKGWFSVN QLEIHLILEN MMMRHSHEGL EYEEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771942.10.0uncharacterized protein LOC114076751
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.21e-11MIKC_MADS family protein