PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g014530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14359.2 Da    PI: 4.317
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g014530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.34.8e-14352150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      k ie+   rq  +sk +  i KK +EL  LCd+++a++++s++g++  ys
  Sopen06g014530.1  3 KIIEDPVSRQQFYSKCKDSIVKKSNELGLLCDTNIALLMVSPNGEVTSYS 52
                      5699999***************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.035155IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-6254IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-15269IPR002100Transcription factor, MADS-box
PfamPF003198.8E-15551IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-51732IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-53253IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MMKIIEDPVS RQQFYSKCKD SIVKKSNELG LLCDTNIALL MVSPNGEVTS YSGGESFEDI  60
MINAMNQFDE LNQHSYEPQA ENINTVEEAD AYEQYLLGVI GRIQLSKAKF LDNQEFLKRN  120
ENVARI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754458e-88HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078433.15e-80agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7GS714e-64A0A3Q7GS71_SOLLC; Uncharacterized protein
STRINGSolyc06g048380.1.11e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.16e-12AGAMOUS-like 66