PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g016880.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 378aa    MW: 42927.6 Da    PI: 10.067
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g016880.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-3270123255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       prlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+
  Sopen06g016880.1  70 PRLRWTPELHLRFVHAVERLGGQDRATPKLVLQFMNIKGLSIAHVKSHLQMYRS 123
                       8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.91766126IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-3066124IPR009057Homeodomain-like
SuperFamilySSF466895.38E-1667125IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-2370125IPR006447Myb domain, plants
PfamPF002496.7E-1071122IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKGGSSSTEE DSKSNPKQQI EFEEEEDLET EVNSKAQGTT RSSSSNSTVE ENGKKPNSGS  60
VRQYVRSKTP RLRWTPELHL RFVHAVERLG GQDRATPKLV LQFMNIKGLS IAHVKSHLQM  120
YRSKKTDDPN QISTDGRFLL ENGDHHIFNL TQLSRLQGFN QTSSSSLRYD NALWNRQANS  180
LYNPYNMNIG GGSSISTRHG FASHVNGHSS HEQLFPWNKS IEIEKNQNRH NQRFWPPITQ  240
IGTSSAKQNL LMTLPMGNRN RDKDEIVKQF NRRSSEQEIM TQIRAKENNS LSSRGKWWMS  300
EEVVGTTTIN TSSSNKRKIQ DSDIDLDLNL SLKTTREYHQ KRLKGEQVGD LLSLSLFSSS  360
TTSEENNAKK ASTLDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-1771125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-1771125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-1771125357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-1771125357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077982.10.0putative two-component response regulator ARR13 isoform X2
TrEMBLA0A3Q7HNH90.0A0A3Q7HNH9_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000772170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85732129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.16e-48G2-like family protein