PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g017200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 216aa    MW: 24469 Da    PI: 8.8386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g017200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12.1e-154390355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      r+h+e+E+rRRdriN  +++Lr+l+P++     +K++Ka  L+ +ve++k+L+
  Sopen06g017200.1 43 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAGLLRSVVEHVKDLE 90
                      78*************************9.....8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.594089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-114390No hitNo description
SuperFamilySSF474598.9E-1543101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-164393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-134390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.19E-5127163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MMDDSSCSKY THETLPSWCH NLQELPLIPT NSCYWSQQFS ASRSHSEAEK RRRDRINAQL  60
STLRKLIPTS EKMDKAGLLR SVVEHVKDLE GKAKEMSSVL NTPSDIDEVI IEEEDESSNN  120
NNIVVKVSFS CDDRPELFSE LNRGLKNLKL TTMEAKITSL GGRIKCILSL QSINVVCTTH  180
SIKHSLRVLL ARIATSPSTS NFRIKSKRQR FFLLAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209KSKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077885.11e-158transcription factor bHLH51-like
TrEMBLA0A3Q7GVN01e-141A0A3Q7GVN0_SOLLC; Uncharacterized protein
STRINGSolyc06g051260.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-31bHLH family protein