PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g019670.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 67aa    MW: 6994.18 Da    PI: 7.4146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g019670.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.5e-091181027
                      GGTS--TTTTT-SS-SSS CS
           zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                      ++tG+Ck+G +CkF+H++
  Sopen06g019670.1  1 MKTGHCKFGITCKFNHPQ 18
                      89**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.169119IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-7118IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MKTGHCKFGI TCKFNHPQPA GVQVPALAAG PFPLPAAVPP PATYPELQPL PLPVDSAEQY  60
GMVTGQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-110HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887306.19e-26zinc finger CCCH domain-containing protein 58
TrEMBLK4C6E62e-23K4C6E6_SOLLC; Uncharacterized protein
STRINGSolyc06g054600.2.13e-24(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1598556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-08C3H family protein