PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g019750.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 1524aa MW: 172797 Da PI: 7.8935

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g019750.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	28.9	1.5e-09	4	41	12	49
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 f+kRr+g+ KK +EL + C++++ ++++s tgk + + Sopen06g019750.1 4 AFTKRREGLYKKSSELATECNVDIGIMMISATGKPHSF 41 59*******************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.708	1	45	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-12	4	41	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-13	4	55	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0023	5	44	IPR002100	Transcription factor, MADS-box
Pfam	PF13976	1.2E-13	610	673	IPR025724	GAG-pre-integrase domain
Gene3D	G3DSA:3.30.420.10	2.3E-31	684	842	IPR012337	Ribonuclease H-like domain
PROSITE profile	PS50994	20.957	684	850	IPR001584	Integrase, catalytic core
Pfam	PF00665	1.2E-19	687	801	IPR001584	Integrase, catalytic core
SuperFamily	SSF53098	7.46E-40	687	848	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF56672	1.65E-25	1139	1256	No hit	No description
Pfam	PF07727	4.3E-44	1143	1277	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	1.65E-25	1286	1464	No hit	No description
CDD	cd09272	1.91E-70	1361	1500	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1524 aa Download sequence Send to blast
MFAAFTKRRE GLYKKSSELA TECNVDIGIM MISATGKPHS FFHPTFDAVI SRFQDPDMQF 60 GESTNLEAND ARNEVNQLKT RLEELDVRED IAIAKKNSYE QMEKTRQKGW WESTEQLNAD 120 EIAIGGRGRL NHIIANPVSP DDPEYQQWAQ KDSMVLSWII ENIDGDLVNQ FLDYKTARDL 180 WKGIETLLSS GRDELQIYDL NTKATSMKQG IDTIEVYFSK LNTLWKEIDR RMPNPMKCAE 240 DITLFNSFIQ RQRLYQFLAG VNDSLDKEKR DILNLDPLPT IDAAYATIRR EIARRGIMTG 300 NSSLERGPSE IGSGLVTQRR SDSSFSRSDS SFRREDKTHL KCSHCGGTKH TKEGCFKLIG 360 YPEWWEDLRQ RKAATKVTKT GGKANAAIGE GEPTSEASST TVTNRRAGTG EASSTSVTDR 420 RTGMSGKDGF TKISGEPWME TEEATGRRRE KILEEPSSRN ESEGKQEALK KSDPLALEPK 480 KSEAQLYKKP KEKQSVGLMC NKSNWIFDCG ATDTMSYDPT DFLSSTSTTR TKIQTANGEF 540 IPITQAGDVD ITSEIHLKNC LLIPSLTHKL LSVSQLTKEL NCTILMTSSD CIVQDAQTGR 600 IIGRGIERGG LYYVNEVTQQ GNALLAQGSP EYQIWMWHRR LGHPSLSYLK RLFPSFKDID 660 FVLDCEACVL AKSHKHSYSP SSTHVSKPFT LIHSDVWGPA PEFAFYKYSY FVLFVDDCTR 720 MSWVYFLKNK SEVYDVFINF YNMICTQFAA QPQILRSDNG GEYINLDMKQ FISDHGLIHQ 780 TTCRDTPQQN GVAERKNRTL LEITRAIMLE SHVPVHFWPE AIATATYLTN RLPTKPLAYQ 840 TPLDTLSSHV SIPSYHSLPP RVFGCVVYVH LPKRIRNKLE PRAIKCVFIG YGVNQKGYRC 900 YDPIQNKIYT SLDCEFFEHS YYYTQPGPQG ETTNDDLSWL IYPEMMDHDP PTQVSNTTDV 960 DSETSVSAPS LQSTPMTTTE HPESTSVEVN SESCTVPTDS ISIPSDNCQN RYELPPRSTR 1020 GVPPKRYDPE YEDQRSRYPI ERISNENLSN TAVAFTTSLY STNIPRTVEE AFEDEKWRQA 1080 MEDEYVALEK NQTWEKCVLP KGKKKVGCRW QIKIGPCISL MLKMPSSVEA LKKKSIWNPH 1140 DFKDGEGCKL KKALYGLKQS PRAWFGRFTK AMKKFGYRQS NSDHTLFIKR ANQKITCLII 1200 YVDDMIITGD DEEEIVTLKG KLFQEFEMKD LGNLKYFLGI EVLRSTQGIF IHQRKYILDL 1260 LAETGMLGGK PADTPIVANH GLQVIEGAKA TDREQYQKIV GKLIYLAHTR PDIAYAVGVV 1320 SRFMHLPQIH HMTAVMRILR YLKGTSSTGI YFGRNDSLDI IAYTDADWAG DRDGRKSTSG 1380 YFTLVGGNLV TWRSKKQKVV ALSSAEAEFR GIVKGITEIL WIRKLLNELG FPQKTACKLF 1440 CDNKAAISIS GNPVQHDRTK HVEVDRHFIK DKLEDKVIKL PFVRSKDQLA DILTKAVSTE 1500 AFSNILRKLS IGNPSAQLEG ECRK

Sequence ? help Back to Top

Protein Sequence Length: 1524 aa Download sequence Send to blast

MFAAFTKRRE GLYKKSSELA TECNVDIGIM MISATGKPHS FFHPTFDAVI SRFQDPDMQF  60
GESTNLEAND ARNEVNQLKT RLEELDVRED IAIAKKNSYE QMEKTRQKGW WESTEQLNAD  120
EIAIGGRGRL NHIIANPVSP DDPEYQQWAQ KDSMVLSWII ENIDGDLVNQ FLDYKTARDL  180
WKGIETLLSS GRDELQIYDL NTKATSMKQG IDTIEVYFSK LNTLWKEIDR RMPNPMKCAE  240
DITLFNSFIQ RQRLYQFLAG VNDSLDKEKR DILNLDPLPT IDAAYATIRR EIARRGIMTG  300
NSSLERGPSE IGSGLVTQRR SDSSFSRSDS SFRREDKTHL KCSHCGGTKH TKEGCFKLIG  360
YPEWWEDLRQ RKAATKVTKT GGKANAAIGE GEPTSEASST TVTNRRAGTG EASSTSVTDR  420
RTGMSGKDGF TKISGEPWME TEEATGRRRE KILEEPSSRN ESEGKQEALK KSDPLALEPK  480
KSEAQLYKKP KEKQSVGLMC NKSNWIFDCG ATDTMSYDPT DFLSSTSTTR TKIQTANGEF  540
IPITQAGDVD ITSEIHLKNC LLIPSLTHKL LSVSQLTKEL NCTILMTSSD CIVQDAQTGR  600
IIGRGIERGG LYYVNEVTQQ GNALLAQGSP EYQIWMWHRR LGHPSLSYLK RLFPSFKDID  660
FVLDCEACVL AKSHKHSYSP SSTHVSKPFT LIHSDVWGPA PEFAFYKYSY FVLFVDDCTR  720
MSWVYFLKNK SEVYDVFINF YNMICTQFAA QPQILRSDNG GEYINLDMKQ FISDHGLIHQ  780
TTCRDTPQQN GVAERKNRTL LEITRAIMLE SHVPVHFWPE AIATATYLTN RLPTKPLAYQ  840
TPLDTLSSHV SIPSYHSLPP RVFGCVVYVH LPKRIRNKLE PRAIKCVFIG YGVNQKGYRC  900
YDPIQNKIYT SLDCEFFEHS YYYTQPGPQG ETTNDDLSWL IYPEMMDHDP PTQVSNTTDV  960
DSETSVSAPS LQSTPMTTTE HPESTSVEVN SESCTVPTDS ISIPSDNCQN RYELPPRSTR  1020
GVPPKRYDPE YEDQRSRYPI ERISNENLSN TAVAFTTSLY STNIPRTVEE AFEDEKWRQA  1080
MEDEYVALEK NQTWEKCVLP KGKKKVGCRW QIKIGPCISL MLKMPSSVEA LKKKSIWNPH  1140
DFKDGEGCKL KKALYGLKQS PRAWFGRFTK AMKKFGYRQS NSDHTLFIKR ANQKITCLII  1200
YVDDMIITGD DEEEIVTLKG KLFQEFEMKD LGNLKYFLGI EVLRSTQGIF IHQRKYILDL  1260
LAETGMLGGK PADTPIVANH GLQVIEGAKA TDREQYQKIV GKLIYLAHTR PDIAYAVGVV  1320
SRFMHLPQIH HMTAVMRILR YLKGTSSTGI YFGRNDSLDI IAYTDADWAG DRDGRKSTSG  1380
YFTLVGGNLV TWRSKKQKVV ALSSAEAEFR GIVKGITEIL WIRKLLNELG FPQKTACKLF  1440
CDNKAAISIS GNPVQHDRTK HVEVDRHFIK DKLEDKVIKL PFVRSKDQLA DILTKAVSTE  1500
AFSNILRKLS IGNPSAQLEG ECRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027775084.1	0.0	uncharacterized protein LOC107027628
TrEMBL	A0A2N9G4T4	0.0	A0A2N9G4T4_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2	3	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	8e-16	AGAMOUS-like 29