PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g019860.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18207.3 Da    PI: 4.9303
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g019860.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.17.2e-114411249
                      HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       f+kRr+g+ KK +EL + C++++ ++++s tgk + +
  Sopen06g019860.1  4 AFTKRREGLYKKSSELATECNVDIGIMMISATGKPHSF 41
                      59*******************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.708145IPR002100Transcription factor, MADS-box
PfamPF003195.6E-14441IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-15456IPR002100Transcription factor, MADS-box
SMARTSM004320.0023544IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MFAAFTKRRE GLYKKSSELA TECNVDIGIM MISATGKPHS FFHPTFDAVI SRFQNPDMQL  60
GESTNLEVNA ARNEVNRLKT RLEELDVRED IAIAKKNSYE QMEETRQKGW CESTEQLNAD  120
EVFIFETWLN ETSSNLHHRL NQLEIEASSS MRHESFGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078492.21e-116agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7GUD71e-105A0A3Q7GUD7_SOLLC; Uncharacterized protein
TrEMBLM1DM881e-105M1DM88_SOLTU; Uncharacterized protein
STRINGSolyc06g059780.1.11e-106(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-18AGAMOUS-like 29