PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g020600.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 246aa    MW: 26867.9 Da    PI: 8.6677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g020600.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016202224123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k+F ++  L  H  +H
  Sopen06g020600.1 202 FECSGCKKVFGSHQALGGHRASH 224
                       89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.59883110IPR007087Zinc finger, C2H2
PfamPF139124.1E-783107IPR007087Zinc finger, C2H2
SMARTSM003550.0283105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.76E-884105No hitNo description
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-485105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.76E-8197224No hitNo description
PfamPF139123.9E-9201225IPR007087Zinc finger, C2H2
SMARTSM003550.67202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MENHPFTSNS HCYHPFSNNF HEETPILPVH QSVDNFHSNP KRKRSKFVKI GGDAAAAASS  60
SSGISKPKIT KKPPDPTAPK ITRPCTECGK KFWSWKALFG HMRCHPERQW RGINPPPNIR  120
PRHDVKSRDF VETSPRKNPK SVFDAIVTEE DQEIASCLLQ LAGGSSELPD NENENENFGV  180
VTSEDQHCSS SSGGGGGKDF RFECSGCKKV FGSHQALGGH RASHKNVKGC FASGAEGGIG  240
TPFGKD
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079065.11e-174zinc finger protein ZAT3-like
SwissprotO654993e-54ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A3Q7GXB31e-154A0A3Q7GXB3_SOLLC; Uncharacterized protein
STRINGSolyc06g060480.1.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA638556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-41C2H2-like zinc finger protein