PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g021230.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 558aa    MW: 62297.1 Da    PI: 6.7449
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g021230.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.31.1e-25314367155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k +++WtpeLH++Fv+ave++ G+++A+P++ilelmkv+gLt+++++SHLQk+R+
  Sopen06g021230.1 314 KMKVDWTPELHKKFVKAVEKI-GIDQAIPSRILELMKVEGLTRHNIASHLQKFRM 367
                       5689*****************.********************************8 PP
2Response_reg37.21.6e-13201261109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+ d++ ++++ +r+ l++ +y +v ++ +  eal  +  k   +++ ++ i+  ++dG   +k +++++ +lp i+v++  + + + +++ 
  Sopen06g021230.1  20 VLLLDKDSNFASQMRSRLQQMDY-IVYTFCNENEALSAISSKSevFHVAIVEISAGNSDG--GFKFLESAK-DLPTIMVSDIHSINITMKCIA 108
                       8999*******************.***************777778************776..344444544.89******************* PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                       +Ga +fl Kp + ++l++
  Sopen06g021230.1 109 LGAVEFLQKPLSDDKLRN 126
                       ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.26E-1616135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-1616159No hitNo description
SMARTSM004483.2E-618128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.22419132IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.9E-920127IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.59E-921131No hitNo description
PROSITE profilePS5129414.174311370IPR017930Myb domain
SuperFamilySSF466893.4E-17312371IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-25312371IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-24314368IPR006447Myb domain, plants
PfamPF002491.3E-6317365IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MVCTENELLE WKDFPKGLRV LLLDKDSNFA SQMRSRLQQM DYIVYTFCNE NEALSAISSK  60
SEVFHVAIVE ISAGNSDGGF KFLESAKDLP TIMVSDIHSI NITMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFHSGG KSVSESLKPV RESLLSMLEL QPVKHEADNE NTNEAEPLTS  180
VVENQKASSS CCDKYPAPST PQQKQGVRSV DDVDYQDHTI LSNEQDSGMH EGDTKSVETT  240
SCDSVAETTV LADSFERLGE AITKEEHYSA ADQNMEDPIA TCSRSNDNGS TCSADPNKAS  300
GLHSSSGTKA NKKKMKVDWT PELHKKFVKA VEKIGIDQAI PSRILELMKV EGLTRHNIAS  360
HLQKFRMQRK QILPKEDERR WPCPQPRDPV QRTYPHKPVM AFPTHHSNHA TTAGQFYPAW  420
IPPGGYPNGA HMWNSPYYHG WQPPETWHWN PQPGLYADVW GCPVTPPSLG SRTPYPQNAS  480
GFHRAEGMQN GYSIIQKSVD LHPAEEVIDK VVKEAINKPW LPLPLGLKPP STESVLDALS  540
KQGISAVPPR NHRSHRPH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-16312372363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079799.10.0two-component response regulator-like APRR2
RefseqXP_015079800.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-137APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A3Q7GV890.0A0A3Q7GV89_SOLLC; Uncharacterized protein
STRINGSolyc06g061030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-141ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]