PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g021280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 337aa    MW: 38086.5 Da    PI: 5.4597
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g021280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-5361331128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtd+elv +yLk+k+++ ++el evi+ +d+yk++PwdLp k  + +++ ewyfF++rdkky++++r+nrat+sgyWkatgkdk+
  Sopen06g021280.1   6 LPPGFRFHPTDQELVGYYLKRKTDELEIEL-EVIPVIDLYKFDPWDLPeKsFLPKRDMEWYFFCSRDKKYPNSSRTNRATNSGYWKATGKDKK 97 
                       79****************************.99**************95344555788*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v++ k+++vg +ktLvfy+grap g +tdWvmheyrl
  Sopen06g021280.1  98 VVC-KSAVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                       ***.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-614156IPR003441NAC domain
PROSITE profilePS5100557.2986156IPR003441NAC domain
PfamPF023652.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAGISLPPGF RFHPTDQELV GYYLKRKTDE LEIELEVIPV IDLYKFDPWD LPEKSFLPKR  60
DMEWYFFCSR DKKYPNSSRT NRATNSGYWK ATGKDKKVVC KSAVVGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDVSQG TPSFQGPFAL CRVIKRKDNI SSKTSDVHGG TVFKQVECSS  180
SIEGFTSTIA LNEPLLLSND MPTPSTYVSG NSNYSTPTNS PYKTTQVEDY DSANLWMPQN  240
MVLDPSKECP QGRSISGNYP HMFSNSTSWQ PSDQYDFTSS SSFPNFRGEV ELSGDLSGYG  300
NVSPFSVDGS CMEFYGSGEI SYKGYNQNDL LGNPYLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-50115712166NO APICAL MERISTEM PROTEIN
1ut4_B3e-50115712166NO APICAL MERISTEM PROTEIN
1ut7_A3e-50115712166NO APICAL MERISTEM PROTEIN
1ut7_B3e-50115712166NO APICAL MERISTEM PROTEIN
3swm_A5e-50115715169NAC domain-containing protein 19
3swm_B5e-50115715169NAC domain-containing protein 19
3swm_C5e-50115715169NAC domain-containing protein 19
3swm_D5e-50115715169NAC domain-containing protein 19
3swp_A5e-50115715169NAC domain-containing protein 19
3swp_B5e-50115715169NAC domain-containing protein 19
3swp_C5e-50115715169NAC domain-containing protein 19
3swp_D5e-50115715169NAC domain-containing protein 19
3ulx_A4e-50213311140Stress-induced transcription factor NAC1
4dul_A3e-50115712166NAC domain-containing protein 19
4dul_B3e-50115712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1583080.0KC158308.1 Solanum lycopersicum AFLP fragment TGG2, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079596.10.0NAC domain-containing protein 71-like
SwissprotO496972e-86NAC71_ARATH; NAC domain-containing protein 71
SwissprotQ9LS243e-86NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A3Q7GVA00.0A0A3Q7GVA0_SOLLC; Uncharacterized protein
STRINGSolyc06g061080.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62561635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-76NAC domain containing protein 96
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  4. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]