PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g021360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 198aa    MW: 22343.4 Da    PI: 5.6179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g021360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000253355123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C+ C + F++   L  H+++H
  Sopen06g021360.1 33 YACTFCRREFRSAQALGGHMNVH 55
                      89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.79E-63060No hitNo description
PfamPF139122.1E-53357IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.973360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MWNPKDDDDS WEIRAFEEDT GNSMGATWPP RFYACTFCRR EFRSAQALGG HMNVHRSDRV  60
RLNQTPSHAS NSSTINFPNA NSTLLIQNQE FIQNGGLCFL YSMPNYYNNP NPTTINKSIN  120
VDPSNLLSNI SPFLTNNLMS PCTIPSSNFQ PHNISSSSFN TSEPSASNST SNDNNRDKRV  180
EDDIDLELRL GWRSATPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-122855229superman protein
2l1o_A7e-122855229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077921.11e-144zinc finger protein 10-like
TrEMBLA0A3Q7GVB31e-129A0A3Q7GVB3_SOLLC; Uncharacterized protein
STRINGSolyc06g061160.1.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-32C2H2 family protein