PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g022000.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 189aa    MW: 20720.5 Da    PI: 8.0539
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g022000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.56.9e-391877362
            zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                      ++ lkcprCds ntkfCyynny+lsqPr+fCk+C+ryWtkGG lrn+PvGg++rkn k+s
  Sopen06g022000.1 18 QQVLKCPRCDSINTKFCYYNNYNLSQPRHFCKNCKRYWTKGGILRNIPVGGSSRKNTKRS 77
                      6889****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-231468IPR003851Zinc finger, Dof-type
PfamPF027011.6E-331975IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6212175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MQDPSSIYSQ INHQFPDQQV LKCPRCDSIN TKFCYYNNYN LSQPRHFCKN CKRYWTKGGI  60
LRNIPVGGSS RKNTKRSSSN SCKRSTNSSS TSSEQNSKTE HFDTPVVQNS PIVDANGPFG  120
SLLASNGPEI GNFLDVLNHN GPNSGSDAAA AQSGNSNNNH EFLGEDSNCW NGTNGWADLA  180
IYNPGSTFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077851.11e-138dof zinc finger protein DOF3.1-like
SwissprotO821552e-38DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A3Q7GVI91e-116A0A3Q7GVI9_SOLLC; Uncharacterized protein
STRINGSolyc06g062520.1.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-33DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]