PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g023060.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 308aa    MW: 34995.4 Da    PI: 6.1892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g023060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14122169355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h  +Er+RR+r  + f+ L + +P++     kKl+Ka+iLe A++YI +Lq
  Sopen06g023060.1 122 QDHLLAERKRRERFSQLFALLAKAIPQL-----KKLDKASILEDAIKYIGELQ 169
                       668899**********************.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.818119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11122169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15124184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-11124173No hitNo description
SMARTSM003532.9E-13125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MENTRFNNNN NNNIIGDEEA PFEFKNLLSE MFTSLPNQNP TTSNSLENIP KIAFSCSSPS  60
SNNSSSSSQN IISFGNKADS YFIEDNELDY DMITEKVMMS NVNTSNSSMA SKRICRSPLQ  120
SQDHLLAERK RRERFSQLFA LLAKAIPQLK KLDKASILED AIKYIGELQE RVSSLEEAAR  180
TIKSSTNLIK STHPTLVHKQ YSHDDHVDDL ESKRHENIND IKVQILDKNV LIGIHCNKQM  240
RSIFSIIAGI MEKLHLTIHH IRVSPSNHTS LHYISILAEI DENVDIKVQD VEKAFELHLL  300
TIQDSTQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078512.10.0transcription factor bHLH18-like
TrEMBLA0A3Q7GYH20.0A0A3Q7GYH2_SOLLC; Uncharacterized protein
STRINGSolyc06g064580.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125981122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.24e-25bHLH family protein