PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g023550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 254aa    MW: 27868.1 Da    PI: 7.1155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g023550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13189234655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  Sopen06g023550.1 189 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 234
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.76E-13187238No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16188246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10189234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MQRGTAGAGG GGLSRFRSAP ATWLEALLES DTENELILSP SSPILHTPNK PPPHPSTPKL  60
KLETGGATRF TGDPGLFESG GSSNFLRQNS SPAEFLSHIS SDGYFSNYGI PSSLDYLSPS  120
VDVSQSFKRT RDDDSESSPR KLASQLKGES SGQLHGSGGS LDAEMENLMD DLVPCKVRAK  180
RGCATHPRSI AERVRRTRIS DRIRKLQELV PNMDKQTNTA DMLEEAVEYV KFLQRQIQEL  240
TEHQKKCTCS MKDQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077368.10.0transcription factor bHLH81-like
SwissprotQ9C8P86e-73BH080_ARATH; Transcription factor bHLH80
TrEMBLM1D3H51e-172M1D3H5_SOLTU; Uncharacterized protein
STRINGSolyc06g065040.2.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117871923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-60bHLH family protein