PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g024660.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 248aa MW: 27952.7 Da PI: 9.3339

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g024660.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.9e-32	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH++Fv+av++LGG++kAtPk +l+lm++kgLtl+h+kSHLQkYRl Sopen06g024660.1 25 KPRLRWTAELHQQFVDAVTKLGGPDKATPKLVLRLMGLKGLTLYHLKSHLQKYRL 79 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.953	22	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	22	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.09E-16	25	80	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-23	25	80	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-9	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-17	125	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MYNAIDRMGS NLYENDGVVM TRDPKPRLRW TAELHQQFVD AVTKLGGPDK ATPKLVLRLM 60 GLKGLTLYHL KSHLQKYRLG QLAKKQNAAE ANKENSGDSS GQFGLHSSGP STSSLSMNFM 120 QGEVPTTEAV MSQIQVQKIL QEQLQVQQKL QMRIEAQGKY LQAILDKAKK NLPDNMNSPN 180 APEATSSHLP AFNSPLSNLM DYGENRDYNI ELPTSNYIVE KEQKKDMNLY KLKEDSINFD 240 LNSRSSYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	25	78	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	25	78	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	25	78	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	25	78	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	25	78	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	25	78	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	25	78	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	25	78	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-176	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015077409.1	0.0	myb family transcription factor PHL11-like
Swissprot	C0SVS4	1e-67	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A3Q7GZC3	1e-168	A0A3Q7GZC3_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400052695	1e-142	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-45	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]