PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g024810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 170aa    MW: 18901.2 Da    PI: 4.4808
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g024810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.9e-152431054
               AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +++g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++
  Sopen06g024810.1  2 RSWGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALSIK 43
                      57**********843...6**********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-25153IPR001471AP2/ERF domain
SMARTSM003804.2E-23158IPR001471AP2/ERF domain
CDDcd000181.92E-25154No hitNo description
PROSITE profilePS5103219.467152IPR001471AP2/ERF domain
PfamPF008471.4E-9243IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-16253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MRSWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAL SIKKDSSILN FPHLIDSLPR  60
PISLSPRDVQ AAAAEAAAME DLNYVSSSSS VSSIDKITSA SEELGEIIEL PRLDGSFESE  120
KSKTELKISE SVDGWLYPPW WASDGDFDGY LFEQDAVGNS LILSNFEMMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-142532173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078634.11e-119dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD38e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q7GXB51e-103A0A3Q7GXB5_SOLLC; Uncharacterized protein
STRINGSolyc06g066540.1.11e-104(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]