PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g026650.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 306aa MW: 33964.9 Da PI: 5.3157

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g026650.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6e-39	30	89	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s Sopen06g026650.1 30 NHQALKCPRCDSVNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 89 57899****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-26	29	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MQDIHPIGGG GGRFFGGAGD RRLRPNNHQN HQALKCPRCD SVNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKSKRSK PKSTTADDAP EEHKSDTNSS SESSSLTATT 120 TAAAAATANT PGAATTEDVS ATSSNSASTY LNFPDSNFFI PHSTNQTFDD QPLMENSVED 180 QFQDIGNFTN MMTSSNDPFN MVDIPAYRLP ENQNSNEQWH TETKMVETLP TSGEMKMEQM 240 STDFLNQTGR VDEYPGLHQS NSELTPLNWQ TGGDHGLYDL TGTVDHQSYW SQTQWGENDN 300 SLNFLP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015080162.1	0.0	dof zinc finger protein DOF5.4-like
TrEMBL	A0A3Q7HTR9	1e-179	A0A3Q7HTR9_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400010397	1e-160	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-33	OBF binding protein 4