PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g027050.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 492aa MW: 53587.7 Da PI: 6.202

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g027050.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.3	1.2e-36	140	199	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ Sopen06g027050.1 140 PDKILPCPRCNSSDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNL 199 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	137	197	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.9E-31	142	198	IPR003851	Zinc finger, Dof-type
Gene3D	G3DSA:2.20.25.10	8.7E-4	144	182	No hit	No description
PROSITE profile	PS50884	27.885	144	198	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	146	182	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MTCDSEIKLF GKILPVVVSG VGRGLSGSDG VMYEGNRNGS DLDRCLEESK ASSVEKDEAS 60 EYEKQEAEKD DITGELSEAK SEEGDQNQMI EESENPKTPS ESESSPKSST EEDPQAVKSS 120 KTENEPTNVT NSEQNNLKKP DKILPCPRCN SSDTKFCYYN NNNVNQPRHF CRSCQRYWTA 180 GGTMRNLPVG AGRRKNKNLA SQYRNISIPE GLLAAGIESP NGLIHHPLFK PNGTILSFGP 240 DLPLCEPMAS ALNQAEKRVS NGIQNGSHKS EVKNSSCKGG DSGDECYRGS NIPTPNMMVE 300 EGKGEPHKAV MHSINGIPSP VPCLHGVPWP FPWNAAVPMS AICPIPFPMP FFPTPYWNCS 360 VPPWSNPWLS PPLRAANEKT SGSDPTSPLG KHSREGDLLK PSNPGGKEQS EQKYSEGSIL 420 VPKTLRIDDP DEAAKSSIWS TLGIKYDSTN RGEFFKALQP KSNDKHNKAN TSAVLHTNPA 480 ALSRSITFQQ GA

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MTCDSEIKLF GKILPVVVSG VGRGLSGSDG VMYEGNRNGS DLDRCLEESK ASSVEKDEAS  60
EYEKQEAEKD DITGELSEAK SEEGDQNQMI EESENPKTPS ESESSPKSST EEDPQAVKSS  120
KTENEPTNVT NSEQNNLKKP DKILPCPRCN SSDTKFCYYN NNNVNQPRHF CRSCQRYWTA  180
GGTMRNLPVG AGRRKNKNLA SQYRNISIPE GLLAAGIESP NGLIHHPLFK PNGTILSFGP  240
DLPLCEPMAS ALNQAEKRVS NGIQNGSHKS EVKNSSCKGG DSGDECYRGS NIPTPNMMVE  300
EGKGEPHKAV MHSINGIPSP VPCLHGVPWP FPWNAAVPMS AICPIPFPMP FFPTPYWNCS  360
VPPWSNPWLS PPLRAANEKT SGSDPTSPLG KHSREGDLLK PSNPGGKEQS EQKYSEGSIL  420
VPKTLRIDDP DEAAKSSIWS TLGIKYDSTN RGEFFKALQP KSNDKHNKAN TSAVLHTNPA  480
ALSRSITFQQ GA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015079782.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A3Q7GYI8	0.0	A0A3Q7GYI8_SOLLC; Uncharacterized protein
STRING	Solyc06g069760.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-77	cycling DOF factor 3