PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g027970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 169aa    MW: 18902.3 Da    PI: 7.2896
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g027970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.52.3e-4310108199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrrkC ++C++ap+fp e+p+kfanvhk+FGasnv+kll+++ +++reda+++l+yeAear+rdPvyG+v+ i+ lq+q+e+l++e
  Sopen06g027970.1  10 PCAACKFLRRKCLPGCIFAPHFPPEEPHKFANVHKIFGASNVTKLLNEVLPHQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVERLEKE 102
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       l+++k+
  Sopen06g027970.1 103 LDSAKA 108
                       *99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.049110IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-4210107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MASSSCYNSP CAACKFLRRK CLPGCIFAPH FPPEEPHKFA NVHKIFGASN VTKLLNEVLP  60
HQREDAVNTL AYEAEARVRD PVYGCVSAIT FLQRQVERLE KELDSAKADL MRYASNDMSQ  120
PLIGTHHHEG ENIGSTLHNM AMSRRMGYDH HGGGNYFPWN DQNNSGGNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-6381189119LOB family transfactor Ramosa2.1
5ly0_B4e-6381189119LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078870.11e-127protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML46e-69LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A3Q7HUK21e-123A0A3Q7HUK2_SOLLC; Uncharacterized protein
STRINGSolyc06g071660.1.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.42e-71LBD family protein
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]