PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g028740.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

BBR-BPC

Protein Properties

Length: 311aa MW: 34645.5 Da PI: 9.8769

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g028740.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	317	6.1e-97	1	311	1	301
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerd..........................maflqrdk 65 md +g ++ rn++y+ep+ + k +lglqlmss++e+ ++ + + +++++++++ m++ +rd+ Sopen06g028740.1 1 MDGNGGMHiRNWSYFEPTpTVPKGHLGLQLMSSMNEKPPHFHNIHDNHQQQQQSHQPDHptvmastnggafhhhrvcglsespmpMEY-MRDS 92 899999999******9677799********9999988888666666665444478888899999999999********. PP GAGA_bind 66 alaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrak 157 ++++ + ++k+l++l +++ +g + l++t+s++s+q++++p+l + + l ee + ++ +++ +kk+ +++ Sopen06g028740.1 93 WVNQ-----KDYREKYLNVLSANHP----YLPGFGFLPETSSAQSMQMHQQPNLVKVETApLVEE-------VCQEGDNIGGLAKKRGVGQSQ 169 .....5667899999998775....56899**********77777765444424443.......334444444444444444555 PP GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250 + k++k kk+kk ++++k++++++ ++r++a++ks ++ +ng+++D+s +P+P+CsCtGa +qCY+WG+GGWqSaCCtt++S yPLP++ kr Sopen06g028740.1 170 ELKSPKPKKAKKATRAPKDESTSS--PPRARAPRKSAEVIINGINMDISVIPIPICSCTGAAQQCYRWGCGGWQSACCTTNLSSYPLPMNVKR 260 666666666666665665554444..489************************************************************ PP GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 rg+RiagrKmS gafkk+LekLa+eGy++snp+DLk hWA+HGtnkfv ir Sopen06g028740.1 261 RGSRIAGRKMSLGAFKKVLEKLASEGYNFSNPIDLKPHWARHGTNKFVIIR 311 ***********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.7E-140	1	311	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-105	1	311	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDGNGGMHIR NWSYFEPTPT VPKGHLGLQL MSSMNEKPPH FHNIHDNHQQ QQQSHQPDHP 60 TVMASTNGGA FHHHRVCGLS ESPMPMEYMR DSWVNQKDYR EKYLNVLSAN HPYLPGFGFL 120 PETSSAQSMQ MHQQPNLVKV ETAPLVEEVC QEGDNIGGLA KKRGVGQSQE LKSPKPKKAK 180 KATRAPKDES TSSPPRARAP RKSAEVIING INMDISVIPI PICSCTGAAQ QCYRWGCGGW 240 QSACCTTNLS SYPLPMNVKR RGSRIAGRKM SLGAFKKVLE KLASEGYNFS NPIDLKPHWA 300 RHGTNKFVII R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015077565.1	0.0	protein BASIC PENTACYSTEINE2-like
Refseq	XP_015077566.1	0.0	protein BASIC PENTACYSTEINE2-like
Refseq	XP_015077567.1	0.0	protein BASIC PENTACYSTEINE2-like
TrEMBL	H1ZN93	0.0	H1ZN93_SOLLC; GAGA-binding transcriptional activator
STRING	PGSC0003DMT400069304	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10048	20	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-80	basic pentacysteine 2