PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g030820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 310aa    MW: 35694.2 Da    PI: 8.2845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g030820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-06148167120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       + C++C+k+F+r  n++ H+
  Sopen06g030820.1 148 FACNICNKTFNRYNNMQMHM 167
                       78*****************9 PP
2zf-C2H216.81.9e-05232254123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C +Cgk+F  k + ++H +++
  Sopen06g030820.1 232 FSCRKCGKTFAVKGDWRTHEKNC 254
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-5134171No hitNo description
Gene3DG3DSA:3.30.160.608.8E-6148167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128742.4E-4148167No hitNo description
PROSITE profilePS5015710.783148175IPR007087Zinc finger, C2H2
SMARTSM003550.095148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SMARTSM00355190195227IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4218252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.6E-5218252No hitNo description
PROSITE profilePS501578.808232252IPR007087Zinc finger, C2H2
SMARTSM0035532232252IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MNFHVHQDNM DVCFDQTPNF IEWLKPSSNN SSPPSSSSTI MTTFLKLPHL YNPQDQIQCL  60
PLLSKLSDPK TEKEEEDYQV KEENMEKVRV SLHIGLPDVD ETTPFSYNKE EENKEKNSTI  120
FNKSCNFNSE SRFWIPTPAQ ILVGPMQFAC NICNKTFNRY NNMQMHMWGH GSEYRKGPES  180
LRGTQPAAML RLPCYCCAQG CKNNINHPRA KPLKDFRTLQ THYKRKHGTK SFSCRKCGKT  240
FAVKGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHIRSFG KGHSPHPSLD GFEEKYCINS  300
STGGSSDDDD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078804.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-119ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A3Q7GZU70.0A0A3Q7GZU7_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000183080.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-112WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]