PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g031790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 282aa    MW: 31383 Da    PI: 8.2112
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g031790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.73.5e-401879263
            zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                      +e+a++cprCds+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Sopen06g031790.1 18 PEQAINCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 79
                      6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.5E-342076IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-262175IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3762276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLVSTKPQQQ DPKKPKPPEQ AINCPRCDSS NTKFCYYNNY SLSQPRYFCK SCRRYWTKGG  60
TLRNVPVGGG CRKNKRSSSS RSSSISSQDQ HSIINTPNNP FPYDSTDLSL AFARLQKQGN  120
GQLGFENHGN ISMMCNENPS GIFLDALRGN TGFLENNNPM NGLIHQQNLY YGVGNIINGD  180
IGLHNVENGG LGVNNNDQEM GLMHNYDQEI SSGVTTSTTM TTVKQEMCHM AKDQGDHNRV  240
LWGFPWQING EGINMADFDS TRRMWNGVGG SSWHGLLNSP LM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077653.10.0dof zinc finger protein DOF2.1-like
TrEMBLA0A3Q7H0C20.0A0A3Q7H0C2_SOLLC; Uncharacterized protein
STRINGSolyc06g075370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.15e-37TARGET OF MONOPTEROS 6