PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g032210.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 139aa    MW: 15877.5 Da    PI: 10.4919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g032210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00171941123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+++Fs+   L  H  +H
  Sopen06g032210.1 19 FECKTCKRRFSSFQALGGHRTSH 41
                      89**********99998888777 PP
2zf-C2H214.10.000146284123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C +Cg+ Fs    L  H+r+H
  Sopen06g032210.1 62 HECLICGMEFSMGQALGGHMRRH 84
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-71884No hitNo description
SMARTSM003550.471941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.391941IPR007087Zinc finger, C2H2
PfamPF139126.6E-111943IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
PfamPF139124.5E-106186IPR007087Zinc finger, C2H2
SMARTSM003550.286284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.126289IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MANCLMLLSS IDRDRRNSFE CKTCKRRFSS FQALGGHRTS HKSTIDIGKF LHGKISKKRK  60
VHECLICGME FSMGQALGGH MRRHRAPVNE IEHSAKRIPV LKKSNSNKRI FCVDLNLTPD  120
ENDDFHFWPM APVPPLLSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078584.21e-99zinc finger protein ZAT9-like
TrEMBLA0A3Q7H3L62e-96A0A3Q7H3L6_SOLLC; Uncharacterized protein
STRINGSolyc06g075780.1.16e-98(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-33C2H2 family protein