PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g032440.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 332aa    MW: 35813.1 Da    PI: 9.0787
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g032440.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.6e-3868127362
            zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       e+ lkcprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  Sopen06g032440.1  68 EAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 127
                       6779*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3651120IPR003851Zinc finger, Dof-type
PfamPF027013.8E-3270125IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.58171125IPR003851Zinc finger, Dof-type
PROSITE patternPS01361073109IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVFSSFPVYL DHPNLHQLQQ ADGHQQGNTG LELPTVQPPP MQVGASPGSI RPGSMVDRAR  60
LAKIPLPEAG LKCPRCDSTN TKFCYFNNYN LSQPRHFCKT CRRYWTRGGA LRSVPVGGGC  120
RRNKRSKSSS NNNNNSSKST GVSNVNTNTI ASGTSTSASP SSCSTEIMNG RHHFPHEQPT  180
QLTPLMAAFQ NLNHHYGGFQ PNLVSTHHGN GSALSSHHHE MGFQIGNSTN TNNTNNLPVP  240
SGGGGSDHQW RLPSLAANTN LYPFQHGSDQ GIHESSSGNN NNINGHHDEQ GLNSTKQFLG  300
TMENNSNQYW GGNAWTGGFS GLNSSSSASH LL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077760.10.0dof zinc finger protein DOF2.4
TrEMBLA0A3Q7H0K40.0A0A3Q7H0K4_SOLLC; Uncharacterized protein
STRINGSolyc06g076030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-44OBF-binding protein 3