PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g032700.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 705aa    MW: 77671.6 Da    PI: 9.7579
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g032700.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07606655147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Sopen06g032700.3 606 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRSFdnaKHRTYVDLKDKWKTL 655
                       678999********************9877778**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.65E-8405493IPR029071Ubiquitin-related domain
CDDcd017690.00123413480No hitNo description
PROSITE profilePS5129415.604601660IPR017930Myb domain
SMARTSM007171.5E-7605658IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-10606656IPR009057Homeodomain-like
CDDcd116608.93E-17607657No hitNo description
SuperFamilySSF466892.39E-15607688IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPHIP RATRSVRRRG IIKRKADGNG TCPFDLLATV AGKLLGEGES  60
SPDSTGSVKG KEKGAIVKDE KVKEAEDKSL KEKSYTEGCY ERGFFISELV SQAPVVNRSL  120
SELPHVQNDT ISRPASASMS SDCSEKLLFA KQFVNGESSE EHENFCSKTE REASGCGVFS  180
SCTLDTENDK QMKIELSNKA KVLTDKGTAI SSSKFPDVWD KKPSTLVTSD ENVKLSLSTY  240
PAPSRSFPVI RNDVKLAYKD DDENSGCTQP STPNKASGAA PRVRDRPIKK LLASKYWVEN  300
LKSDDEGHAN SGGKTMHVYY NRNIGYKRDG YKQQRSQRDF PFKKRKLFKC GSFSNSDGEM  360
STDGISSSPK NDLHGNASGS SKASSGGCAA VGTSVFSGGR PFLRPGDSHV KFRIKSFKVP  420
ELFVDIPENA TIGSLKRTVM EAVTAILGGG LRIGVVFQGK KVRDDNKTLL QTGISHDYKL  480
DALGFSLEPN PVQTSQPLGQ DCRSCVLPYE TPQPLTSIYV SRCPSPSTVI HTGIHQGRSD  540
DHTGTSLSTF LESDHESAPS PHYAALEKIS ANSRALVPLT AVNAEALSAV PLRKPKRSEA  600
TQRRIRRPFS VSEVEALVQA VEKLGTGRWR DVKLRSFDNA KHRTYVDLKD KWKTLVHTAR  660
ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ AKQQMKQPSE TYLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-555936964107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336345QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078006.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_027773306.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E31e-124TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A3Q7H4740.0A0A3Q7H474_SOLLC; Uncharacterized protein
STRINGSolyc06g076270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-120TRF-like 2