PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g033810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 207aa    MW: 22257.2 Da    PI: 8.723
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g033810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.53.5e-41251241100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++p  +r da++slvyeA++r+rdPvyG++g i++lqqq+++l++e
  Sopen06g033810.1  25 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLMEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQQIQNLQVE 117
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+++++e
  Sopen06g033810.1 118 LNTIRAE 124
                       **99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.18924125IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-4125122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MQQQMGRRHV LGPVGGGTTL NNVTPCAACK LLRRRCAEEC PFSPYFSPHE PHKFAAVHKV  60
FGASNVSKLL MEVPVGQRAD AANSLVYEAN VRLRDPVYGC MGAISTLQQQ IQNLQVELNT  120
IRAEILRYKY REATNSLIAS ISTSVAPELP QAPPTPPPPP PPPSVVVVSS SSSSASSTSS  180
NLYTPASSSV ANFSAITNNN ISYFDQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-44181324118LOB family transfactor Ramosa2.1
5ly0_B1e-44181324118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078806.11e-151LOB domain-containing protein 13
SwissprotQ9AT615e-72LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A3Q7H2021e-148A0A3Q7H202_SOLLC; Uncharacterized protein
STRINGSolyc06g082430.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.14e-74LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]