PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g034130.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 120aa MW: 13410.9 Da PI: 4.4304

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g034130.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.2	2.3e-13	3	50	53	100
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++ +e Sopen06g034130.1 3 NREDAVISMVYEATARLRDPVYGSVGIISALQKHIFHLQSELNEASAE 50 79****************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.816	1	51	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-12	3	47	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MDNREDAVIS MVYEATARLR DPVYGSVGII SALQKHIFHL QSELNEASAE AMSLRTQLSD 60 ASTSLPSSLM QVSPFTPENH EFHHSQNSSQ QNAYSNNDLQ LILPEAADYC FQQVLLPLPY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027773898.1	6e-83	LOB domain-containing protein 25-like
TrEMBL	A0A3Q7H1C1	3e-75	A0A3Q7H1C1_SOLLC; Uncharacterized protein
STRING	Solyc06g082770.2.1	5e-76	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-16	LOB domain-containing protein 25