PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g034560.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 458aa    MW: 50600.8 Da    PI: 7.9017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g034560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09314361455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen06g034560.1 314 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 361
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.11E-10308365No hitNo description
SuperFamilySSF474591.31E-16308378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16310377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6314361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDNDCFSNGG IQPPFHFDRK IPLNSLHSPQ EQNSDYFLNT HWDNNSTDNQ YTRFDSALSS  60
IVSSPVPSNS VNSNSSLCEL IGKLGSICTS PATPFTSNCD STRTSCYTTP MSSPPKLHIP  120
IMNQIGKDKV PNLGNSVVMN SPPFPSLSSA KFSCFGSRSF NGRTSQFELN NEDSRYGSGT  180
GVMGIGNLTR ISSSPCVVQN KNSSLMMCER LNLGKISGRN EECSVSEQDP NGEMGSKTTN  240
VLNSKKRKAV KSKNFVPIVD ETGKKRAKST EGNGSNNGTV KMEEQKGNED DRKIAEPPKD  300
YIHVRARRGQ ATDSHSLAER VRREKISQRM KLLQDLVPGC NKVTGKALML DEIINYVQSL  360
QHQVEFLSMK LASVNPRTDF HIDSLLHKEI SQPSGSLHQH VFPVDGYAEN LAQLPTICED  420
DLQSIVQMGF NQNSNQDLIL QSQTFPVPNS ESHMKIKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077876.10.0transcription factor bHLH62-like isoform X1
TrEMBLA0A3Q7HYA00.0A0A3Q7HYA0_SOLLC; Uncharacterized protein
STRINGSolyc06g083170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-73bHLH family protein