PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g004060.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 182aa MW: 20604.5 Da PI: 8.5005

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g004060.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	218.1	2.7e-67	6	165	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv.ekeesasts 95 + +s+q+Cy+ CnfCn +lav+vP +slf +vtvrCGhCt+l svn+a a q ++ s +++ ++ + + ++++ ++++++++ Sopen07g004060.1 6 DVASDQLCYIPCNFCNIVLAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSSASWQNHH-----VQVPNYTAPEYRMDFgSSTKCNMNR 93 5689****************************************99999888887752222.....2222222222222220222233333 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s + + +++v + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Sopen07g004060.1 94 MS---MRTPITNNVHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 165 32...344555555555679***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.8E-71	8	165	IPR006780	YABBY protein
SuperFamily	SSF47095	5.37E-8	110	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	113	159	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MASCIDVASD QLCYIPCNFC NIVLAVNVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSSS 60 SASWQNHHVQ VPNYTAPEYR MDFGSSTKCN MNRMSMRTPI TNNVHEERIV NRPPEKRQRV 120 PSAYNQFIKE EIQRIKANNP DISHREAFST AAKNWAHFPH IHFGLMLESN NQAKLACGSR 180 KL

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	0.0	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015080741.1	1e-136	axial regulator YABBY 5-like
Swissprot	Q8GW46	4e-87	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A068FJR2	1e-130	A0A068FJR2_9SOLN; YAB5 protein
STRING	PGSC0003DMT400079392	1e-128	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-84	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]