PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g005420.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 656aa MW: 73961.4 Da PI: 5.4383

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g005420.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	62.6	7.7e-20	414	466	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + W LH++Fve+v+ L G ++A Pk++ elm+++ Lt ++++SHLQkYRl Sopen07g005420.1 414 SKTLWRDPLHNKFVEVVDIL-GVKNARPKKVHELMNMPELTKKQIASHLQKYRL 466 6788**************.9*****************************8 PP
2	Response_reg	35.3	5.8e-13	245	341	9	105
HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEE CS Response_reg 9 lvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdfls 99 ++r+++ +++ e++ v ++ + e al l+ + +Dl+l+Di m +md +++ +ei++e ++pi +++ ++++++++ l+ a f+ Sopen07g005420.1 245 AIRQVVGELVWLERL-LVMTVNSIEVALGGLRSSGlsFDLLLTDIHMLKMDVFQFQQEITKEF-DIPICFMSNDKKDSTLIKGLDNRAVFFIL 335 567777777777888.8999999******988888******************9999.9************************ PP SS--HH CS Response_reg 100 Kpfdpe 105 Kp+ ++ Sopen07g005420.1 336 KPITQD 341 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09272	1.48E-29	196	260	No hit	No description
PROSITE profile	PS50110	15.684	235	351	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	4.79E-10	244	341	No hit	No description
Pfam	PF00072	1.4E-8	245	341	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	9.6E-14	246	357	No hit	No description
SuperFamily	SSF52172	7.91E-13	246	353	IPR011006	CheY-like superfamily
Gene3D	G3DSA:1.10.10.60	4.2E-20	410	470	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.223	410	469	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-13	411	470	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-18	413	466	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MCASDMNTQQ YEEESEMGKQ MPLNLSKDQY EQLLNILGTI QAGNGGFNSD NSNNMLNGAV 60 NLAGPFSEEP SGTCQQLVTT ISHECEPNSF EEVILHSAWQ QAMTHEFEAL YANDTWEMVM 120 LPDGKKAIGC KWRKFTSDLL KDFDVLSYKT TSSPLDCTEK LKITDGNHIY HVLRYLKQDP 180 TMGIFISNKP ELTVSAYCDS DWAACPESRR SVSGYLVRMG DSPISWKPKK QATVSLSSAE 240 AEYRAIRQVV GELVWLERLL VMTVNSIEVA LGGLRSSGLS FDLLLTDIHM LKMDVFQFQQ 300 EITKEFDIPI CFMSNDKKDS TLIKGLDNRA VFFILKPITQ DGINYLWNYA TSLGKKKHKG 360 KHVVQVFEEN TNEKILNEVI DIESSSSVSK KDKSIRKYDD VENKDYSSQR AKKSKTLWRD 420 PLHNKFVEVV DILGVKNARP KKVHELMNMP ELTKKQIASH LQKYRLTLDK KPNPELVLDS 480 SKTTSGNANQ LSITTDNISA LAPQGMTKNL NNAGPDTEPD LRNFMYDYEK DRKFSNILSR 540 HLNQKPYKLQ GNHEGINADG ISLQLGNVLP NSNLEQGKYA SITAEERPLH SSTVSPNLTL 600 QQEIYGGVTA GDALFDHLNV RSNSENGSGD YESFTAEDWS ILNSLFLDHE LEDRLE

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MCASDMNTQQ YEEESEMGKQ MPLNLSKDQY EQLLNILGTI QAGNGGFNSD NSNNMLNGAV  60
NLAGPFSEEP SGTCQQLVTT ISHECEPNSF EEVILHSAWQ QAMTHEFEAL YANDTWEMVM  120
LPDGKKAIGC KWRKFTSDLL KDFDVLSYKT TSSPLDCTEK LKITDGNHIY HVLRYLKQDP  180
TMGIFISNKP ELTVSAYCDS DWAACPESRR SVSGYLVRMG DSPISWKPKK QATVSLSSAE  240
AEYRAIRQVV GELVWLERLL VMTVNSIEVA LGGLRSSGLS FDLLLTDIHM LKMDVFQFQQ  300
EITKEFDIPI CFMSNDKKDS TLIKGLDNRA VFFILKPITQ DGINYLWNYA TSLGKKKHKG  360
KHVVQVFEEN TNEKILNEVI DIESSSSVSK KDKSIRKYDD VENKDYSSQR AKKSKTLWRD  420
PLHNKFVEVV DILGVKNARP KKVHELMNMP ELTKKQIASH LQKYRLTLDK KPNPELVLDS  480
SKTTSGNANQ LSITTDNISA LAPQGMTKNL NNAGPDTEPD LRNFMYDYEK DRKFSNILSR  540
HLNQKPYKLQ GNHEGINADG ISLQLGNVLP NSNLEQGKYA SITAEERPLH SSTVSPNLTL  600
QQEIYGGVTA GDALFDHLNV RSNSENGSGD YESFTAEDWS ILNSLFLDHE LEDRLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	4e-14	412	470	4	62	ARR10-B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027774110.1	0.0	two-component response regulator ARR14-like
STRING	Solyc07g009580.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15814	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.2	2e-29	response regulator 1