PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g006930.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 238aa    MW: 26855 Da    PI: 4.8852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g006930.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-133880754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI +L
  Sopen07g006930.1 38 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIEEL 80
                      57*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-173095IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2283180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-113485No hitNo description
SMARTSM003533.3E-143786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-163796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-103880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.26E-5160224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFLQSEELDS YFDEPISSYY DSSSPDGSQS SMASKNIVSE RNRRKKLNER LFALRAVVPN  60
ISKMDKASII KDAIDYIEEL HKQERRIRGE ISELESGRSS SKKNSNDVEF EQDESFDSKP  120
KRSRRFEMQY GYDSSGSTTR SPPSSSPVDV LELRVSSMGE KTVVVSLTCS KRTDTMVKVC  180
EVFESLNIKI ISANITAFSG RLLKTAFIEA DEEERDLLKL RIETAIASLN DPDSPMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-143680953Transcription factor MYC2
5gnj_B6e-143680953Transcription factor MYC2
5gnj_E6e-143680953Transcription factor MYC2
5gnj_F6e-143680953Transcription factor MYC2
5gnj_G6e-143680953Transcription factor MYC2
5gnj_I6e-143680953Transcription factor MYC2
5gnj_M6e-143680953Transcription factor MYC2
5gnj_N6e-143680953Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-148HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080844.11e-170transcription factor bHLH35
SwissprotQ2HIV93e-81BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A3Q7H5Q11e-168A0A3Q7H5Q1_SOLLC; Uncharacterized protein
STRINGSolyc07g018010.2.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-70bHLH family protein