PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g009260.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 196aa MW: 21929.9 Da PI: 7.3844

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g009260.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.2	1.2e-24	14	59	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ri+n+ nrqvtfskRr g++KKA+EL++LC+a vav+ifss++k+y Sopen07g009260.1 14 RIQNSKNRQVTFSKRRIGLFKKASELCTLCGAYVAVVIFSSSNKVY 59 8*******************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.3E-32	5	64	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.768	5	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-25	6	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.07E-30	6	74	No hit	No description
PRINTS	PR00404	3.4E-19	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.7E-25	14	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-19	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-19	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MKIFIGRKRI VIARIQNSKN RQVTFSKRRI GLFKKASELC TLCGAYVAVV IFSSSNKVYS 60 CGHPSAELIV DKFLGENQPG FDAPNSTSLS HQNVNVDEIN NELNLLENSL EQQKKHGKAL 120 KGLRKELPYE QLNFSDLKKL IELLEAADEE VERVASQLME YDTVFPYQTI GMCLSPLRVD 180 GNSSSNFNEA PSGSNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3kov_B	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3kov_I	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3kov_J	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3p57_A	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3p57_B	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3p57_C	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3p57_D	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3p57_I	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
3p57_J	1e-17	6	86	1	81	Myocyte-specific enhancer factor 2A
5f28_A	2e-17	5	86	1	82	MEF2C
5f28_B	2e-17	5	86	1	82	MEF2C
5f28_C	2e-17	5	86	1	82	MEF2C
5f28_D	2e-17	5	86	1	82	MEF2C
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081301.1	1e-143	agamous-like MADS-box protein AGL61
TrEMBL	A0A3Q7J965	1e-127	A0A3Q7J965_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400094407	7e-90	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	4e-28	AGAMOUS-like 61