PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g009270.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21994.9 Da    PI: 6.7728
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g009270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.8e-231459247
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                      ri+n+ nrqvtfskRr g++K A+EL++LC+a vav+ifss++k+y
  Sopen07g009270.1 14 RIQNSKNRQVTFSKRRIGLFKRASELCTLCGAYVAVVIFSSSNKVY 59
                      8*******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.198565IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-27564IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-23576IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-17727IPR002100Transcription factor, MADS-box
PfamPF003191.7E-231460IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-172742IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-174263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MKIFVGRKRT VFARIQNSKN RQVTFSKRRI GLFKRASELC TLCGAYVAVV IFSSSNKVYS  60
CGHPSAELIV DKFLGENQSG FDAPNSTSLS HQNVNVDEIN NELNMLENSL EKQKEHGKAL  120
KGLRKELAYE QLNFFDLKKL IELLEAADEE VERVASQVME YDTVFPYQTI GMCLSPLRVD  180
GNSSSNFNEA PSGSNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-14686181Myocyte-specific enhancer factor 2A
3kov_B3e-14686181Myocyte-specific enhancer factor 2A
3kov_I3e-14686181Myocyte-specific enhancer factor 2A
3kov_J3e-14686181Myocyte-specific enhancer factor 2A
3p57_A3e-14686181Myocyte-specific enhancer factor 2A
3p57_B3e-14686181Myocyte-specific enhancer factor 2A
3p57_C3e-14686181Myocyte-specific enhancer factor 2A
3p57_D3e-14686181Myocyte-specific enhancer factor 2A
3p57_I3e-14686181Myocyte-specific enhancer factor 2A
3p57_J3e-14686181Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081302.11e-143agamous-like MADS-box protein AGL61
TrEMBLA0A3Q7J9651e-120A0A3Q7J965_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000940243e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-25AGAMOUS-like 61