PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g011050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HRT-like
Protein Properties Length: 456aa    MW: 51032.8 Da    PI: 10.0685
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g011050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like49.85.9e-16272302131
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                       iCGv+l++GsvC r+P  g+KRC+eHKGm++
  Sopen07g011050.1 272 ICGVALGHGSVCIRPPKTGNKRCAEHKGMKV 302
                       8****************************97 PP
2HRT-like43.94.1e-14330359130
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                       iCG+il+ G +C r P + +KRC eHKG+R
  Sopen07g011050.1 330 ICGFILDSGAPCARIPFQRNKRCMEHKGRR 359
                       8****************************9 PP
3HRT-like49.85.7e-16419449131
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                       iCGv+l+dGs+C+ qP+ gRKRCe HK mR+
  Sopen07g011050.1 419 ICGVHLNDGSFCTSQPAVGRKRCEGHKCMRV 449
                       8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MGAADKSFTR RLRREDCKRT KHDSSFSHWK ILVGPNDWED YLLGKEGTER YRTQNLPNCT  60
SCSGVYELGI AVSRRKAGRE ATRLDPDYIV PVYVGKSNNV RTRLQQYGRV GAHLENDYSN  120
SELHAGEIIS GPKRAGLFTE TFSRGFSIVY RWAPMNDNKD AERTEAQLLD KFDYAWNKGT  180
NGVRRHNDVL RKLDGISRKT HLPAFIRKLQ LSLEKQKGVR IKACEPLLLE NGSGFHDSFK  240
STNFLPQILK FGRSQPRIVS VNVGVNGDPN IICGVALGHG SVCIRPPKTG NKRCAEHKGM  300
KVNSVKSKLI AEGNGSTRPC VSIDEENAPI CGFILDSGAP CARIPFQRNK RCMEHKGRRN  360
RGSTSQPTTY KIGQWTHNPI LENRTSSSND CQHILSSKAG RQDSQDFSSS LIHQNYNVIC  420
GVHLNDGSFC TSQPAVGRKR CEGHKCMRVK EPISSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080387.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A3Q7HA300.0A0A3Q7HA30_SOLLC; Uncharacterized protein
STRINGSolyc07g021550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.15e-92effector of transcription2