PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g012150.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 298aa    MW: 33839.1 Da    PI: 10.1433
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g012150.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.52e-43161311116
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPt+eelvv+yLkk+v++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl
  Sopen07g012150.1  16 LPPGFRFHPTNEELVVHYLKKRVASVPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVL 107
                       79****************************.89***************988899*************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkg 116
                       ++ ++++vg+kk Lvfy g+ pk 
  Sopen07g012150.1 108 TAgGTQKVGVKKALVFYGGKPPKE 131
                       9977788**********9998874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4810132IPR003441NAC domain
PROSITE profilePS5100544.83916171IPR003441NAC domain
PfamPF023651.1E-2017127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MESTDSSTGS HHQPQLPPGF RFHPTNEELV VHYLKKRVAS VPLPVSIIAE VDLYKFDPWE  60
LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA  120
LVFYGGKPPK EAHHLIYIVG WSVFHKIKLI REPIRPLPRG GDLTLGELLK YKSQEGVRVL  180
LLLWDDKTSH DKFFITTEGL MGTHDEETKK FFKHSSVICV LSPRYASSKL SIMKQQGVAS  240
RMNGRDEQLF KAVLVLQLPL LNRVSYKVFL GLDLCQAFKF EDQKQNTPKL SHGYKNQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-5411699161NAC domain-containing protein 19
3swm_B2e-5411699161NAC domain-containing protein 19
3swm_C2e-5411699161NAC domain-containing protein 19
3swm_D2e-5411699161NAC domain-containing protein 19
3swp_A2e-5411699161NAC domain-containing protein 19
3swp_B2e-5411699161NAC domain-containing protein 19
3swp_C2e-5411699161NAC domain-containing protein 19
3swp_D2e-5411699161NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7019870.0JF701987.1 Solanum lycopersicum NAC3 mRNA, complete cds.
GenBankKC1430400.0KC143040.1 Solanum lycopersicum sinor-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774109.11e-117NAC transcription factor 56-like
TrEMBLK4CH252e-89K4CH25_SOLLC; NAC transcription factor
TrEMBLK7P5D72e-89K7P5D7_SOLLC; NAC3
TrEMBLM1BP482e-89M1BP48_SOLTU; Uncharacterized protein
STRINGSolyc07g063420.2.13e-90(Solanum lycopersicum)
STRINGPGSC0003DMT4000496643e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-72NAC domain containing protein 25