PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g019390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 347aa    MW: 39758.1 Da    PI: 5.7109
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g019390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34541452102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Flkk++e+++d++++++isws+n+nsfvv+d+++f+ ++Lpk+Fkh+nf+SF+RQLn+Y F+k+++++         weF+++ F+kgkk+ll
  Sopen07g019390.1  54 FLKKTFEMVDDPNTDSIISWSNNQNSFVVWDPHKFSIHLLPKHFKHNNFSSFIRQLNTYRFRKIDSDR---------WEFANEGFQKGKKHLL 137
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                        +ikr+k+
  Sopen07g019390.1 138 INIKRRKQ 145
                       ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.5E-3550143IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5350143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3750143IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.3E-185477IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3054143IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434093117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-18105117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVIDVNEKEM NVNGGVVVEV KEEPVIFIND EDDIIGDSVP KPLDGLRDVG PPPFLKKTFE  60
MVDDPNTDSI ISWSNNQNSF VVWDPHKFSI HLLPKHFKHN NFSSFIRQLN TYRFRKIDSD  120
RWEFANEGFQ KGKKHLLINI KRRKQYPQLG GGGGGGGGAK SWVGGCCKDG TEAAEIEKLK  180
KDHNSLKMEI LKLKQQQEST DNYLATMKER LQNSEIKQKY MVFFLAKTFH NPMFVQHLIE  240
KMKQGKKTTV ENGTKKRRLC SDENQEEYTT IKSEIQTLFS CDESSNSPVK GNNSSPEMVS  300
ENYILWEKLM EDDMICENGA ETDKYQSEIV LELEDLISNP SECKCMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-225214327129Heat shock factor protein 1
5d5v_B1e-225214327129Heat shock factor protein 1
5d5v_D1e-225214327129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080977.10.0heat stress transcription factor A-2-like
TrEMBLA0A3Q7HBF90.0A0A3Q7HBF9_SOLLC; Uncharacterized protein
STRINGSolyc07g040680.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-80heat shock transcription factor A2