PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g019970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 281aa    MW: 31244.1 Da    PI: 8.9288
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g019970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  Sopen07g019970.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56
                      79***********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.042161IPR017930Myb domain
SuperFamilySSF466897.18E-16258IPR009057Homeodomain-like
SMARTSM007171.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-14556IPR009057Homeodomain-like
CDDcd116606.73E-20657No hitNo description
PfamPF139212.0E-8862No hitNo description
SMARTSM005264.7E-16117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.16E-15117199IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-14119195IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.648119187IPR005818Linker histone H1/H5, domain H15
PfamPF005384.1E-9122180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA  60
NGQGPRDKSR TPKAKANPDA AAAPLAITYA PLSSTLVPQD ASADTVMEDS SKCALDGKTA  120
SKYNQMIYDA LSSLNEPNGS DTSKLVNFIE QRHEVPQNFR RLLSSRLRRL VQQDKLEKIE  180
NSYRIKKEVL EKTKTAATPK QKHVGPRQLP NNAYLGDTAE EAAITAAYKV AEAENKSFVA  240
AEAAKEAERV SKMEEDSDNS LQIYKDIFDK CSHGEIVLLT A
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-155HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243744.10.0telomere repeat-binding factor 4
RefseqXP_015083120.10.0telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L17e-71TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A3Q7H8050.0A0A3Q7H805_SOLLC; Uncharacterized protein
STRINGXP_009757029.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-66MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]