PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g022640.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 220aa MW: 25235 Da PI: 9.2664

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g022640.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.5	1.3e-11	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien++ r v++ kR++ l KA EL +LCd+e i s+ Sopen07g022640.1 10 FIENNTERRVSYRKRQKEFLTKARELNTLCDVELTTFIDSP 50 8*******************************987766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.484	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.5E-15	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-12	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	7.52E-15	3	59	No hit	No description
PRINTS	PR00404	6.3E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-10	10	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MVRKKVKLAF IENNTERRVS YRKRQKEFLT KARELNTLCD VELTTFIDSP YHKKHEVFSK 60 FADLTTQEKQ LTKRINEIEN EIEKVRKENK KMEYTNQMYG LLNGEQIPDR MNPEDLSGLT 120 YVINKSLKQI NDAIKAKSHE DGSTSTAPQT IAGLMDSSVT SSEISWDPLL APVDAPVLSE 180 IPLLVPSIDE KSLKKKTNFS RISLQFRGLI FIKDPTVELS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	25	RKKVKLAFIENNTERRVSYRKRQK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081493.1	1e-137	MADS-box transcription factor PHERES 1-like
TrEMBL	M1DKQ4	4e-99	M1DKQ4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400090586	1e-100	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1329	10	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65330.1	4e-12	M-type_MADS family protein