PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g023530.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 227aa MW: 25943.2 Da PI: 7.882

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g023530.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.2	5e-30	20	72	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtp+LHe F+eav+ LGG +kAtPk+i ++m vkgL ++hvkSHLQ+YR Sopen07g023530.1 20 PRLRWTPQLHELFIEAVQLLGGGHKATPKRIQQMMAVKGLNISHVKSHLQMYR 72 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.626	16	76	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-27	17	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.42E-15	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-24	20	73	IPR006447	Myb domain, plants
Pfam	PF00249	9.5E-10	21	72	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MKNKCCKRIG VRQYKKSSIP RLRWTPQLHE LFIEAVQLLG GGHKATPKRI QQMMAVKGLN 60 ISHVKSHLQM YRNLKERGNL NIVRSVNNFH EETPQFSWSS PQHVCETLLE HGPSKISKQI 120 DPGSDKLPNY KAIINAYIAE NNIYCYDYQE AQGSLSSGMT KEEEEDDGGG GPSSEICEFS 180 HEREINFWPL NDYNHQNSQY DSSTKQVLKS TKDNSHVNLD LSISLCF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-18	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-18	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-18	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-18	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-18	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-18	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-18	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-18	21	77	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	1e-130	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081822.2	1e-171	uncharacterized protein LOC107025554
TrEMBL	A0A3Q7HA81	1e-148	A0A3Q7HA81_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400002410	1e-142	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-26	G2-like family protein