PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026330.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22117.2 Da    PI: 8.6566
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026330.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.9e-16959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ie+ + r+  +s+R+  i KK +EL v C+++va+++fs+ g++ +yss
  Sopen07g026330.1  9 KKIEDPTSRKQFYSNRKDSIVKKSNELAVVCGTDVALLMFSPAGQVTTYSS 59
                      689**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.067161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-20275IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-12323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRNKIVMKK IEDPTSRKQF YSNRKDSIVK KSNELAVVCG TDVALLMFSP AGQVTTYSSK  60
ESVEDIMIEA MNKSVNPRPI PNLNEQLLMQ SLKQSKSEGQ MVGKIAIAEA HEKKLNELKE  120
TIREAQQKIR YCNPQVENIS SVQEAEAYEQ FIRSNMEQIQ QSKAKLLGVQ GFVHRNEYPA  180
VNTEDTAAAG TSSGWTF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-98HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774508.11e-145agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7HBW81e-138A0A3Q7HBW8_SOLLC; Uncharacterized protein
STRINGSolyc07g052700.2.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-20AGAMOUS-like 66